STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0913KEGG: bbt:BBta_2171 hypothetical protein. (512 aa)    
Predicted Functional Partners:
Slit_0835
KEGG: cyt:cce_0545 putative nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family.
     0.880
Slit_0914
Ankyrin; KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Ankyrin; SMART: Ankyrin.
 
 
   0.859
Slit_0912
KEGG: dar:Daro_1484 hypothetical protein.
       0.776
Slit_0911
KEGG: psa:PST_1341 hypothetical protein.
       0.773
Slit_0915
KEGG: bid:Bind_1223 hypothetical protein.
       0.727
Slit_0901
PFAM: LRV FeS4 cluster domain protein; leucine rich repeat variant; KEGG: azo:azo0564 hypothetical protein.
 
     0.700
Slit_0910
KEGG: mca:MCA0256 ferredoxin, 2Fe-2S.
 
     0.626
Slit_0809
KEGG: avn:Avin_01660 hypothetical protein.
  
     0.597
Slit_0909
KEGG: azo:azo0556 ferredoxin; TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
     0.594
Slit_0907
Nitrogen fixation protein; KEGG: azo:azo0558 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
     0.535
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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