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Slit_0932 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0932" - TetR family transcriptional regulator in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0932TetR family transcriptional regulator (249 aa)    
Predicted Functional Partners:
Slit_0933
Efflux transporter, RND family, MFP subunit (311 aa)
 
          0.806
Slit_0934
Acriflavin resistance protein (1028 aa)
 
          0.762
Slit_0931
Hypothetical protein (220 aa)
              0.625
Slit_0930
Hypothetical protein (110 aa)
              0.625
Slit_0935
Type I secretion outer membrane protein, TolC family (443 aa)
              0.609
Slit_0929
RNA polymerase, sigma-24 subunit, ECF subfamily (191 aa)
              0.608
Slit_0539
Hypothetical protein (544 aa)
   
          0.459
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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