STRINGSTRING
Slit_0933 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0933" - Efflux transporter, RND family, MFP subunit in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0933Efflux transporter, RND family, MFP subunit (311 aa)    
Predicted Functional Partners:
Slit_0934
Acriflavin resistance protein (1028 aa)
 
 
  0.982
Slit_0935
Type I secretion outer membrane protein, TolC family (443 aa)
   
 
  0.934
Slit_2078
Hypothetical protein (402 aa)
   
 
  0.884
Slit_2077
Hypothetical protein (399 aa)
   
 
  0.884
Slit_1490
Hypothetical protein (406 aa)
   
 
  0.884
Slit_0932
TetR family transcriptional regulator (249 aa)
 
          0.806
Slit_2575
ABC transporter (235 aa)
   
 
  0.748
Slit_2079
ABC transporter (226 aa)
   
 
  0.748
Slit_1489
ABC transporter (242 aa)
   
 
  0.748
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (227 aa)
   
 
  0.748
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (10%) [HD]