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Slit_0935 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0935" - Type I secretion outer membrane protein, TolC family in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0935Type I secretion outer membrane protein, TolC family (443 aa)    
Predicted Functional Partners:
Slit_0934
Acriflavin resistance protein (1028 aa)
   
 
  0.947
Slit_2002
Efflux transporter, RND family, MFP subunit (382 aa)
 
 
  0.942
Slit_0933
Efflux transporter, RND family, MFP subunit (311 aa)
   
 
  0.934
Slit_2079
ABC transporter (226 aa)
   
 
  0.863
Slit_1488
Efflux transporter, RND family, MFP subunit (397 aa)
   
 
  0.860
Slit_1308
Secretion protein HlyD family protein (328 aa)
   
 
  0.854
Slit_2617
Acriflavin resistance protein (1067 aa)
   
 
  0.765
Slit_2001
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (1048 aa)
   
 
  0.765
Slit_2078
Hypothetical protein (402 aa)
   
 
  0.715
Slit_2077
Hypothetical protein (399 aa)
   
 
  0.715
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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