STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJPFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily. (148 aa)    
Predicted Functional Partners:
Slit_0968
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: mag:amb0607 monomeric isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family.
      0.719
Slit_2858
TIGRFAM: MJ0042 family finger-like protein; KEGG: mfa:Mfla_0022 zinc finger/thioredoxin putative.
  
     0.679
Slit_0491
PFAM: General secretion pathway L; KEGG: nmu:Nmul_A1893 general secretion pathway L.
 
     0.636
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.588
Slit_0956
KEGG: rpi:Rpic_2479 signal peptide protein.
       0.584
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
    0.563
Slit_2120
KEGG: tbd:Tbd_1918 hypothetical protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: Peptidoglycan-binding lysin domain.
 
  
 0.550
Slit_0953
TIGRFAM: adenylosuccinate lyase; KEGG: mei:Msip34_0992 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.501
Slit_0564
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.481
Slit_1443
KEGG: nmu:Nmul_A1850 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II.
 
    0.478
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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