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Slit_0982 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0982" - ABC transporter in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0982ABC transporter (625 aa)    
Predicted Functional Partners:
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (583 aa)
   
0.785
Slit_2672
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP (364 aa)
     
 
  0.646
Slit_0983
Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 (299 aa)
              0.628
Slit_2818
ABC transporter (304 aa)
   
 
0.602
Slit_2512
ABC transporter (615 aa)
       
0.585
Slit_0722
ABC transporter (294 aa)
 
   
0.585
Slit_0578
ABC transporter (271 aa)
 
   
0.584
Slit_2359
ABC transporter (245 aa)
 
   
0.584
Slit_2138
ABC transporter (632 aa)
   
 
0.551
Slit_2864
ATPase P (902 aa)
     
 
    0.536
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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