STRINGSTRING
Slit_0987 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0987" - ATPase AAA in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0987ATPase AAA (267 aa)    
Predicted Functional Partners:
Slit_0988
Von Willebrand factor type A (796 aa)
 
   
  0.984
Slit_0024
Von Willebrand factor type A (754 aa)
 
   
  0.910
Slit_1127
Von Willebrand factor type A (608 aa)
 
   
  0.892
Slit_2344
Von Willebrand factor type A (656 aa)
 
   
  0.882
Slit_0986
Ribulose-bisphosphate carboxylase (118 aa)
 
     
  0.799
Slit_0985
Ribulose-bisphosphate carboxylase (473 aa)
 
     
  0.697
Slit_1122
Nitric-oxide reductase (458 aa)
 
   
  0.577
Slit_1121
Cytochrome C class I (141 aa)
 
   
  0.564
Slit_0989
Hypothetical protein (100 aa)
              0.561
Slit_2541
Lysine decarboxylase (748 aa)
       
      0.519
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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