Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Slit_0988KEGG: rme:Rmet_1498 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A. (796 aa)    
Predicted Functional Partners:
Slit_0987
PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_2622 rubisco activation protein CbbQ.
 
 
 0.969
Slit_2345
PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: neu:NE1919 nitric oxide reductase NorQ protein.
 
 
 0.885
Slit_0986
KEGG: tbd:Tbd_2623 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain.
 
   
 0.882
Slit_0023
PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ.
 
 
 0.881
Slit_0989
KEGG: neu:NE1917 hypothetical protein.
 
     0.873
Slit_1125
PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: dar:Daro_3194 ATPase.
 
 
 0.843
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.745
Slit_1122
Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.593
Slit_1121
PFAM: cytochrome c class I; KEGG: mmb:Mmol_1050 putative nitric-oxide reductase subunit C.
  
  
 0.580
Slit_0984
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cyn:Cyan7425_3855 transcriptional regulator, LysR family.
 
     0.432
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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