STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1000Hypothetical protein; KEGG: rha:RHA1_ro01495 alanine dehydrogenase. (89 aa)    
Predicted Functional Partners:
Slit_0999
PFAM: permease; KEGG: psa:PST_0233 permease.
       0.773
Slit_1001
KEGG: tbd:Tbd_2398 hypothetical protein.
       0.594
Slit_1002
KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein.
       0.551
Slit_1003
KEGG: tgr:Tgr7_2643 hypothetical protein.
       0.551
Slit_1004
PFAM: OsmC family protein; KEGG: lbf:LBF_0575 OsmC-like protein.
       0.489
Slit_0998
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rfr:Rfer_3639 sigma-24 (FecI-like); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.482
Slit_0996
KEGG: rhi:NGR_b21810 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
       0.455
Slit_0997
KEGG: lch:Lcho_3118 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
       0.455
Slit_0995
SMART: regulatory protein ArsR; KEGG: mei:Msip34_1149 transcriptional regulator, ArsR family.
       0.423
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.