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Slit_1000 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1000" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1000Hypothetical protein (89 aa)    
Predicted Functional Partners:
Slit_0999
Permease (345 aa)
              0.859
Slit_1001
Hypothetical protein (82 aa)
              0.669
Slit_1003
Hypothetical protein (143 aa)
              0.623
Slit_1002
Thiol-disulfide isomerase and thioredoxins family protein (76 aa)
              0.623
Slit_1004
OsmC family protein (135 aa)
              0.556
Slit_0998
RNA polymerase, sigma-24 subunit, ECF subfamily (177 aa)
              0.541
Slit_0997
Arsenical-resistance protein (343 aa)
              0.511
Slit_0996
Protein-tyrosine phosphatase, low molecular weight (165 aa)
              0.511
Slit_0995
ArsR family transcriptional regulator (105 aa)
              0.476
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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