STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1001KEGG: tbd:Tbd_2398 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Slit_2617
PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_2397 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.740
Slit_1002
KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein.
       0.714
Slit_1003
KEGG: tgr:Tgr7_2643 hypothetical protein.
       0.714
Slit_1004
PFAM: OsmC family protein; KEGG: lbf:LBF_0575 OsmC-like protein.
  
    0.645
Slit_0999
PFAM: permease; KEGG: psa:PST_0233 permease.
       0.595
Slit_1000
Hypothetical protein; KEGG: rha:RHA1_ro01495 alanine dehydrogenase.
       0.594
Slit_0996
KEGG: rhi:NGR_b21810 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
   
   0.511
Slit_1005
PFAM: glutaredoxin 2; KEGG: pfl:PFL_4226 hypothetical protein.
  
    0.428
Slit_1145
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.424
Slit_1728
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tbd:Tbd_2225 sulfide-quinone reductase.
 
     0.423
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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