Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1004PFAM: OsmC family protein; KEGG: lbf:LBF_0575 OsmC-like protein. (135 aa)    
Predicted Functional Partners:
Slit_1002
KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein.
 
     0.833
Slit_0999
PFAM: permease; KEGG: psa:PST_0233 permease.
 
     0.745
Slit_1003
KEGG: tgr:Tgr7_2643 hypothetical protein.
       0.678
Slit_1001
KEGG: tbd:Tbd_2398 hypothetical protein.
  
    0.644
Slit_1159
KEGG: mms:mma_3515 hypothetical protein.
  
     0.559
Slit_1000
Hypothetical protein; KEGG: rha:RHA1_ro01495 alanine dehydrogenase.
       0.489
Slit_0866
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
     
 0.468
Slit_1005
PFAM: glutaredoxin 2; KEGG: pfl:PFL_4226 hypothetical protein.
       0.452
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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