STRINGSTRING
Slit_1012 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1012" - Histidine kinase in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1012Histidine kinase (447 aa)    
Predicted Functional Partners:
Slit_1013
Transcriptional regulator (222 aa)
   
  0.987
Slit_2492
Transcriptional regulator (224 aa)
     
  0.778
Slit_1014
Cytochrome C (166 aa)
 
     
  0.761
Slit_1015
Hypothetical protein (140 aa)
 
     
  0.691
Slit_0484
Transcriptional regulator (242 aa)
     
  0.603
Slit_2528
Hypothetical protein (246 aa)
 
          0.542
Slit_2389
Transcriptional regulator (228 aa)
     
  0.531
Slit_2939
Response regulator receiver protein (121 aa)
 
          0.450
Slit_1011
Thioredoxin (108 aa)
              0.449
Slit_1018
Phosphoesterase PA-phosphatase related protein (250 aa)
              0.416
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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