STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1014PFAM: Dihaem cytochrome c; KEGG: lch:Lcho_3009 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Slit_1015
PFAM: Domain of unknown function DUF1924; KEGG: rfr:Rfer_0746 cytochrome c-like protein.
 
    0.947
Slit_1321
PFAM: cytochrome B561; KEGG: mgm:Mmc1_0316 cytochrome b561.
     0.930
Slit_1323
PFAM: Domain of unknown function DUF1924; KEGG: bph:Bphy_6332 hypothetical protein.
 
    0.781
Slit_0172
PFAM: cytochrome B561; KEGG: pmy:Pmen_1714 cytochrome b561.
      
 0.618
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
      
 0.618
Slit_1012
Histidine kinase; KEGG: rpi:Rpic_0576 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
     0.612
Slit_1018
KEGG: cli:Clim_0823 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
 
     0.596
Slit_1016
KEGG: tbd:Tbd_1242 hypothetical protein.
       0.533
Slit_1017
KEGG: aeh:Mlg_2566 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein.
       0.533
Slit_1013
KEGG: rpi:Rpic_0575 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein.
       0.520
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.