STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1027KEGG: rme:Rmet_2903 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Slit_2099
PFAM: Zinc finger, CHCC-type; KEGG: dar:Daro_3295 hypothetical protein.
  
     0.739
Slit_0100
KEGG: tbd:Tbd_2408 glutamate--cysteine ligase GshA; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA.
  
     0.712
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.642
Slit_2398
PFAM: Domain of unknown function DUF1841; KEGG: nmu:Nmul_A2703 hypothetical protein.
  
     0.623
Slit_1026
KEGG: rme:Rmet_2903 hypothetical protein.
 
    
0.588
Slit_1840
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: dar:Daro_2864 succinate dehydrogenase subunit D.
  
     0.518
Slit_0333
PFAM: FAD linked oxidase domain protein; KEGG: mei:Msip34_2262 FAD linked oxidase domain protein.
  
     0.501
Slit_1841
KEGG: azo:azo1549 succinate dehydrogenase; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit.
  
     0.477
Slit_1546
PFAM: fatty acid desaturase; KEGG: nmu:Nmul_A2141 fatty acid desaturase.
  
     0.423
Slit_1029
TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: mag:amb1535 response regulator; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.
       0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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