STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgR-2Type IV pilus assembly PilZ; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (240 aa)    
Predicted Functional Partners:
orn
Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
     
 0.773
Slit_0547
KEGG: app:CAP2UW1_3839 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver.
 
  
 0.762
Slit_0550
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.759
Slit_0615
KEGG: neu:NE2077 hypothetical protein.
 
    0.742
Slit_0593
PFAM: flagellar hook-length control protein; KEGG: bpd:BURPS668_0217 flagellar hook-length control protein FliK.
 
  
 0.694
Slit_0543
PFAM: OmpA/MotB domain protein; KEGG: mms:mma_2098 flagellar motor protein MotB.
 
 
 0.680
Slit_1016
KEGG: tbd:Tbd_1242 hypothetical protein.
  
     0.666
Slit_0589
KEGG: har:HEAR1886 putative FliO (partial); TIGRFAM: flagellar biosynthetic protein FliO; PFAM: flagellar biosynthesis protein FliO.
 
    0.665
Slit_0617
KEGG: mms:mma_1447 FliS flagellar protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
 
  
 0.657
Slit_0548
KEGG: azo:azo1459 chemotaxis protein CheV-like; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver.
 
  
 0.654
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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