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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1087KEGG: bpy:Bphyt_3699 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Slit_1088
PFAM: Excinuclease ABC C subunit domain protein; KEGG: paa:Paes_2394 hypothetical protein.
       0.757
Slit_1090
PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: cli:Clim_0128 N-6 DNA methylase.
       0.657
Slit_1089
KEGG: cph:Cpha266_0894 hypothetical protein.
       0.651
Slit_1091
KEGG: cph:Cpha266_0896 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase.
       0.613
Slit_1092
KEGG: mmb:Mmol_1473 hypothetical protein.
       0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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