STRINGSTRING
Slit_1092 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1092" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1092Hypothetical protein (500 aa)    
Predicted Functional Partners:
Slit_1096
Tn7-like transposition protein B (677 aa)
 
          0.826
Slit_1093
Hypothetical protein (311 aa)
              0.752
Slit_2596
Mannose-sensitive agglutinin (MSHA) (209 aa)
   
          0.718
Slit_2601
Hypothetical protein (292 aa)
   
          0.683
Slit_2597
Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (318 aa)
   
          0.666
Slit_2591
Hypothetical protein (351 aa)
   
          0.664
Slit_1102
DEAD/DEAH box helicase domain protein (909 aa)
 
          0.655
Slit_2083
Type IV pilus assembly related protein (207 aa)
   
          0.625
Slit_2593
Type II and III secretion system protein (560 aa)
   
          0.583
Slit_0711
Hypothetical protein (869 aa)
   
          0.581
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (9%) [HD]