Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1097KEGG: mmb:Mmol_1467 hypothetical protein. (442 aa)    
Predicted Functional Partners:
Slit_1095
KEGG: mmb:Mmol_1469 hypothetical protein.
       0.790
Slit_1096
KEGG: mmb:Mmol_1468 putative Tn7-like transposition protein B.
       0.781
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.656
Slit_2458
PFAM: Carbohydrate kinase, FGGY-like; KEGG: fal:FRAAL4566 glycerol kinase.
    
  0.619
Slit_1098
Hypothetical protein; KEGG: syg:sync_2889 nitrate reductase associated protein.
       0.596
Slit_2336
KEGG: swp:swp_2189 hypothetical protein swp_2189.
     
  0.546
Slit_1103
KEGG: dps:DP2255 hypothetical protein.
   
 
 0.538
Slit_1094
Manually curated; PFAM: helix-turn-helix domain protein; KEGG: bcm:Bcenmc03_5052 XRE family transcriptional regulator; SMART: helix-turn-helix domain protein.
       0.432
Slit_1092
KEGG: mmb:Mmol_1473 hypothetical protein.
     
 0.401
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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