STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1105Hypothetical protein; KEGG: ctt:CtCNB1_2565 probable mannitol operon repressor. (183 aa)    
Predicted Functional Partners:
Slit_1104
PFAM: FRG domain protein; KEGG: mmw:Mmwyl1_1746 hypothetical protein.
       0.623
Slit_1106
KEGG: glo:Glov_1418 hypothetical protein.
       0.468
Slit_0104
Phosphotransferase system, phosphocarrier protein HPr; KEGG: mfa:Mfla_0147 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
    
   0.454
Slit_1103
KEGG: dps:DP2255 hypothetical protein.
       0.417
Slit_1102
Manually curated; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: mhu:Mhun_2466 ski2-like helicase; SMART: DEAD-like helicase; helicase domain protein.
       0.409
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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