STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1111PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sml:Smlt3384 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Slit_1112
Protein of unknown function DUF1260; KEGG: pfs:PFLU4667 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1260.
       0.570
Slit_1110
KEGG: eum:ECUMN_3728 hypothetical protein.
 
     0.545
Slit_1113
Manually curated; KEGG: fjo:Fjoh_4073 hypothetical protein.
 
     0.480
Slit_1241
PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein.
  
    0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.