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Slit_1111 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1111" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1111Hypothetical protein (296 aa)    
Predicted Functional Partners:
Slit_1963
Hypothetical protein (86 aa)
   
          0.761
Slit_1227
GCN5-related N-acetyltransferase (191 aa)
   
          0.755
Slit_1112
Hypothetical protein (118 aa)
              0.642
Slit_0449
Alpha/beta hydrolase fold protein (271 aa)
   
          0.642
Slit_1110
Hypothetical protein (282 aa)
              0.536
Slit_1114
Protein-tyrosine phosphatase, low molecular weight (113 aa)
 
          0.517
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes (247 aa)
   
          0.456
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (230 aa)
   
          0.451
Slit_1989
GCN5-related N-acetyltransferase (145 aa)
   
          0.440
Slit_1109
Hypothetical protein (148 aa)
              0.424
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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