Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1114Protein-tyrosine phosphatase, low molecular weight; KEGG: app:CAP2UW1_3538 hypothetical protein; manually curated; SMART: Protein-tyrosine phosphatase, low molecular weight. (113 aa)    
Predicted Functional Partners:
Slit_1113
Manually curated; KEGG: fjo:Fjoh_4073 hypothetical protein.
 
     0.815
Slit_1115
PFAM: protein of unknown function DUF1260; Protein of unknown function DUF695; KEGG: abc:ACICU_02508 putative cytoplasmic protein.
       0.603
Slit_1112
Protein of unknown function DUF1260; KEGG: pfs:PFLU4667 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1260.
       0.467
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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