STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1122Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (458 aa)    
Predicted Functional Partners:
Slit_1121
PFAM: cytochrome c class I; KEGG: mmb:Mmol_1050 putative nitric-oxide reductase subunit C.
 
 0.999
Slit_1129
Nitrite reductase (NO-forming); KEGG: dar:Daro_3323 cytochrome c, class I:cytochrome d1, heme region; PFAM: cytochrome d1 heme region; cytochrome c class I.
 
 0.999
Slit_1127
KEGG: mmb:Mmol_1055 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
  
 0.944
Slit_1123
PFAM: cytochrome c oxidase subunit III; KEGG: tbd:Tbd_0560 putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein.
 
  
 0.919
Slit_1125
PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: dar:Daro_3194 ATPase.
 
  
 0.918
Slit_1126
KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein.
 
  
 0.820
Slit_1124
KEGG: mmb:Mmol_1053 hypothetical protein.
       0.644
Slit_0328
KEGG: hypothetical protein.
  
 
 0.605
Slit_0023
PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ.
 
  
 0.580
Slit_0024
Von Willebrand factor type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
  
  
 0.578
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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