STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1124KEGG: mmb:Mmol_1053 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Slit_0411
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: rma:Rmag_0039 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
     
  0.900
Slit_0412
KEGG: tcx:Tcr_1964 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
     
  0.900
Slit_0414
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
     
  0.900
Slit_2654
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA2882 cytochrome oxidase, cytochrome c subunit.
     
  0.900
Slit_2655
KEGG: sth:STH3153 cytochrome c oxidase heme b and copper-binding subunit; PFAM: cytochrome c oxidase subunit I.
     
  0.900
Slit_1123
PFAM: cytochrome c oxidase subunit III; KEGG: tbd:Tbd_0560 putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein.
       0.788
Slit_1122
Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
       0.623
Slit_1125
PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: dar:Daro_3194 ATPase.
       0.614
Slit_1127
KEGG: mmb:Mmol_1055 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
       0.539
Slit_1126
KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein.
       0.530
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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