Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1131KEGG: tbd:Tbd_2327 putative sulfite reductase; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein. (104 aa)    
Predicted Functional Partners:
Slit_1685
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
  
 
 
 0.827
Slit_1686
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
  
 
 
 0.827
Slit_1679
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit, putative.
  
 
   0.762
Slit_1680
PFAM: Nitrate reductase gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
 
   
 0.749
Slit_1684
KEGG: tbd:Tbd_2483 DsrE protein; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein.
 
  
 0.720
Slit_1682
KEGG: tbd:Tbd_2481 DsrH protein; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein.
 
 
 0.719
Slit_1683
KEGG: tgr:Tgr7_2188 sulfur relay protein TusC/DsrF; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein.
 
  
 0.713
Slit_1130
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_0492 TonB-dependent receptor.
       0.620
Slit_1132
PFAM: NnrS family protein; KEGG: neu:NE1723 hypothetical protein.
       0.603
Slit_1619
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_1376 heterodisulfide reductase.
  
 
   0.590
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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