Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slit_1132PFAM: NnrS family protein; KEGG: neu:NE1723 hypothetical protein. (408 aa)    
Predicted Functional Partners:
Slit_1131
KEGG: tbd:Tbd_2327 putative sulfite reductase; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein.
       0.603
Slit_0582
PFAM: peptidase U32; KEGG: dar:Daro_0108 peptidase U32.
 
    0.602
Slit_1122
Nitric-oxide reductase; KEGG: dar:Daro_3191 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.590
Slit_1129
Nitrite reductase (NO-forming); KEGG: dar:Daro_3323 cytochrome c, class I:cytochrome d1, heme region; PFAM: cytochrome d1 heme region; cytochrome c class I.
 
  
 0.570
Slit_1121
PFAM: cytochrome c class I; KEGG: mmb:Mmol_1050 putative nitric-oxide reductase subunit C.
 
    0.535
Slit_0583
PFAM: peptidase U32; KEGG: app:CAP2UW1_0989 peptidase U32.
 
    0.509
Slit_1130
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfu:Sfum_0492 TonB-dependent receptor.
       0.491
Slit_0581
PFAM: Sterol-binding domain protein; KEGG: app:CAP2UW1_0991 hypothetical protein.
 
    0.439
Slit_1119
KEGG: tbd:Tbd_2174 hypothetical protein.
 
     0.434
Slit_1133
KEGG: dar:Daro_1673 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.434
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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