STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1152KEGG: bpy:Bphyt_0569 hypothetical protein. (59 aa)    
Predicted Functional Partners:
Slit_1151
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rfr:Rfer_2362 cytochrome bd ubiquinol oxidase, subunit I.
       0.773
Slit_1150
KEGG: lhk:LHK_02253 CydB; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
       0.746
Slit_1153
KEGG: tmz:Tmz1t_2020 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein.
       0.488
Slit_1154
PFAM: Methyltransferase type 11; KEGG: azo:azo3702 hypothetical protein.
       0.488
Slit_1148
PFAM: Cyd operon protein YbgE; KEGG: abb:ABBFA_001525 Cyd operon protein YbgE (Cyd_oper_YbgE) family protein.
       0.478
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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