Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1167KEGG: mpt:Mpe_A0051 putative carboxypeptidase; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A. (336 aa)    
Predicted Functional Partners:
Slit_1166
PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A0052 hydrolase or acyltransferase-like protein.
 
 
   0.956
Slit_1168
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mag:amb0826 transcriptional regulator.
       0.464
Slit_2465
KEGG: mmb:Mmol_0489 ornithine-acyl(acyl carrier protein) N-acyltransferase.
 
     0.445
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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