STRINGSTRING
Slit_1207 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1207" - Sel1 domain protein repeat-containing protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1207Sel1 domain protein repeat-containing protein (317 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase, subunit beta (784 aa)
     
      0.912
msbA
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (583 aa)
     
 
    0.735
hscA
Fe-S protein assembly chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB (622 aa)
     
  0.718
dnaK
Chaperone protein DnaK; Acts as a chaperone (641 aa)
     
  0.718
Slit_1208
Rhodanese domain protein (134 aa)
   
        0.601
Slit_1312
Ankyrin (314 aa)
 
    0.599
hypA
Hydrogenase nickel insertion protein HypA; Probably plays a role in a hydrogenase nickel cofactor insertion step (113 aa)
       
      0.598
Slit_0392
Ankyrin (263 aa)
 
    0.594
Slit_1271
Serine/threonine protein kinase (405 aa)
 
      0.556
Slit_1206
Hypothetical protein (160 aa)
              0.539
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (9%) [HD]