Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1208KEGG: rfr:Rfer_3913 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein. (134 aa)    
Predicted Functional Partners:
Slit_0143
KEGG: tgr:Tgr7_2218 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
   
 0.709
Slit_0285
KEGG: tbd:Tbd_1981 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
 
     0.623
Slit_2415
KEGG: afr:AFE_2558 rhodanese-like domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
   
 0.574
Slit_1209
KEGG: dvm:DvMF_1566 hypothetical protein.
       0.547
Slit_1207
Manually curated; PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein; SMART: Sel1 domain protein repeat-containing protein.
       0.524
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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