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Slit_1226 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1226" - ABC transporter in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1226ABC transporter (265 aa)    
Predicted Functional Partners:
Slit_0691
Hypothetical protein (262 aa)
 
 
  0.995
Slit_1738
Hypothetical protein (260 aa)
 
 
  0.992
Slit_0692
Mammalian cell entry related domain protein (153 aa)
 
  0.984
Slit_0693
Toluene tolerance family protein (215 aa)
 
 
  0.903
Slit_1741
Mammalian cell entry related domain protein (316 aa)
   
   
    0.841
Slit_0690
ABC transporter (266 aa)
   
   
 
0.806
Slit_0694
Anti-sigma-factor antagonist (80 aa)
         
    0.800
Slit_0437
ABC transporter (240 aa)
 
   
 
0.753
Slit_2408
Permease YjgP/YjgQ family protein (358 aa)
   
 
    0.634
Slit_1227
GCN5-related N-acetyltransferase (191 aa)
              0.631
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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