STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1229KEGG: pca:Pcar_2556 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Slit_1228
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
 
     0.939
Slit_2266
KEGG: eba:ebA6177 hypothetical protein.
  
     0.538
Slit_2361
PFAM: ABC-type uncharacterised transport system; KEGG: nmu:Nmul_A0583 hypothetical protein.
  
     0.494
Slit_1227
PFAM: GCN5-related N-acetyltransferase; KEGG: mei:Msip34_0963 GCN5-related N-acetyltransferase.
       0.491
Slit_1230
Hypothetical protein; Manually curated; KEGG: prw:PsycPRwf_1762 hypothetical protein.
       0.468
Slit_2360
KEGG: nmu:Nmul_A0584 putative ABC-2 type transport system permease protein.
  
     0.465
Slit_2134
KEGG: azo:azo3184 hypothetical protein.
  
     0.444
Slit_2222
PFAM: protein of unknown function DUF58; KEGG: tmz:Tmz1t_3010 protein of unknown function DUF58.
  
     0.422
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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