STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1230Hypothetical protein; Manually curated; KEGG: prw:PsycPRwf_1762 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
 
   
 0.553
Slit_0111
PFAM: Pilus assembly protein PilP; KEGG: tbd:Tbd_0205 type IV pilus assembly protein PilP.
  
   
 0.537
Slit_1231
PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: neu:NE1564 hypothetical protein.
       0.531
Slit_1281
KEGG: net:Neut_1779 putative transmembrane protein.
  
     0.501
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
 
   
 0.499
Slit_0007
KEGG: mfa:Mfla_0188 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
     0.495
Slit_0110
PFAM: Pilus assembly protein PilO; KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein.
  
   
 0.490
Slit_1228
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
       0.468
Slit_1229
KEGG: pca:Pcar_2556 hypothetical protein.
       0.468
Slit_0109
PFAM: Fimbrial assembly family protein; KEGG: tbd:Tbd_0203 type IV pilus assembly protein PilN.
  
   
 0.466
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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