STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1241PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein. (320 aa)    
Predicted Functional Partners:
Slit_1242
Putative transcriptional regulator, Crp/Fnr family; KEGG: amr:AM1_2994 cyclic nucleotide-binding protein, putative; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
       0.581
Slit_1243
KEGG: tgr:Tgr7_0337 hypothetical protein.
       0.581
Slit_1240
PFAM: MscS Mechanosensitive ion channel; KEGG: syp:SYNPCC7002_A2738 mechanosensitive ion channel family protein.
       0.568
Slit_2311
PFAM: CHASE2 domain protein; KEGG: mei:Msip34_1734 putative CHASE2 sensor protein.
  
     0.545
Slit_1111
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sml:Smlt3384 hypothetical protein.
  
    0.442
Slit_1244
PFAM: BolA family protein; KEGG: mfa:Mfla_0244 BolA-like protein; Belongs to the BolA/IbaG family.
       0.442
Slit_1245
KEGG: tbd:Tbd_2499 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.420
Slit_1301
KEGG: dar:Daro_0970 response regulator receiver; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region.
  
    0.401
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.