STRINGSTRING
Slit_1241 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1241" - GumN family protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1241GumN family protein (320 aa)    
Predicted Functional Partners:
Slit_1243
Hypothetical protein (388 aa)
              0.655
Slit_1242
Crp/Fnr family transcriptional regulator (118 aa)
              0.655
Slit_1240
MscS Mechanosensitive ion channel (350 aa)
              0.647
Slit_1937
DNA methylase N-4/N-6 domain protein (843 aa)
   
          0.613
Slit_1469
Outer membrane autotransporter barrel domain protein (1833 aa)
   
          0.556
Slit_1102
DEAD/DEAH box helicase domain protein (909 aa)
   
          0.542
Slit_1244
BolA family protein (78 aa)
              0.502
Slit_1245
Glutaredoxin-like protein (109 aa)
              0.478
Slit_2929
Glutaredoxin (170 aa)
   
          0.456
Slit_2577
Hypothetical protein (121 aa)
   
          0.451
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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