Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Slit_1248Sulfur relay protein, TusE/DsrC/DsvC family; KEGG: rma:Rmag_0881 sulfite reductase, gamma subunit-related protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein. (97 aa)    
Predicted Functional Partners:
Slit_1685
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
  
 
 
 0.828
Slit_1686
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
  
 
 
 0.814
Slit_1495
KEGG: tbd:Tbd_2658 DsrC -like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein.
  
     0.775
Slit_1679
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit, putative.
  
 
   0.764
Slit_1680
PFAM: Nitrate reductase gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
 
   
 0.754
Slit_1682
KEGG: tbd:Tbd_2481 DsrH protein; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein.
 
 
 0.734
Slit_1684
KEGG: tbd:Tbd_2483 DsrE protein; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein.
 
  
 0.706
Slit_1683
KEGG: tgr:Tgr7_2188 sulfur relay protein TusC/DsrF; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein.
 
  
 0.700
Slit_1249
KEGG: rpi:Rpic_2947 hypothetical protein.
       0.675
Slit_1677
KEGG: tbd:Tbd_2476 hypothetical protein.
 
     0.558
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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