Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1252PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 major facilitator transporter. (414 aa)    
Predicted Functional Partners:
Slit_1251
PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 hypothetical protein.
     
 0.592
Slit_1250
Pseudouridine synthase; KEGG: mms:mma_1950 ribosomal small subunit pseudouridine synthase A protein; PFAM: pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
       0.574
Slit_1253
KEGG: pna:Pnap_4494 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase family amidotransferase; asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.
     
 0.559
Slit_1303
PFAM: HPP family protein; KEGG: dal:Dalk_3567 HPP family protein.
  
     0.413
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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