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Slit_1308 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1308" - Secretion protein HlyD family protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1308Secretion protein HlyD family protein (328 aa)    
Predicted Functional Partners:
Slit_1307
Drug resistance transporter, EmrB/QacA subfamily (505 aa)
   
  0.980
Slit_1597
Type I secretion outer membrane protein, TolC family (453 aa)
 
 
  0.889
Slit_2000
RND efflux system, outer membrane lipoprotein, NodT family (488 aa)
 
  0.885
Slit_1309
MarR family transcriptional regulator (142 aa)
              0.875
Slit_2913
Type I secretion outer membrane protein, TolC family (443 aa)
   
 
  0.854
Slit_0935
Type I secretion outer membrane protein, TolC family (443 aa)
   
 
  0.854
Slit_2358
RND efflux system, outer membrane lipoprotein, NodT family (518 aa)
 
  0.806
Slit_1487
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) (454 aa)
 
 
  0.767
Slit_2001
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (1048 aa)
 
 
  0.734
Slit_2002
Efflux transporter, RND family, MFP subunit (382 aa)
   
   
  0.718
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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