Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_1316KEGG: app:CAP2UW1_4204 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Slit_1317
KEGG: rfr:Rfer_0862 flavin reductase-like, FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding.
       0.566
Slit_1318
KEGG: noc:Noc_1628 hypothetical protein.
       0.548
Slit_1315
SMART: helicase c2; KEGG: nmu:Nmul_A1412 helicase C2.
       0.532
Slit_1319
PFAM: protein of unknown function DUF188; KEGG: mms:mma_0312 hypothetical protein; Belongs to the UPF0178 family.
       0.515
Slit_1320
PFAM: major facilitator superfamily MFS_1; KEGG: net:Neut_0214 major facilitator transporter.
       0.515
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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