Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Slit_1320PFAM: major facilitator superfamily MFS_1; KEGG: net:Neut_0214 major facilitator transporter. (401 aa)    
Predicted Functional Partners:
Slit_1319
PFAM: protein of unknown function DUF188; KEGG: mms:mma_0312 hypothetical protein; Belongs to the UPF0178 family.
       0.773
Slit_1317
KEGG: rfr:Rfer_0862 flavin reductase-like, FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding.
 
     0.741
Slit_1318
KEGG: noc:Noc_1628 hypothetical protein.
       0.723
Slit_1323
PFAM: Domain of unknown function DUF1924; KEGG: bph:Bphy_6332 hypothetical protein.
 
     0.524
Slit_1316
KEGG: app:CAP2UW1_4204 hypothetical protein.
       0.515
Slit_1324
PFAM: Dihaem cytochrome c; KEGG: abu:Abu_2321 diheme cytochrome c precursor, putative.
 
     0.509
Slit_1321
PFAM: cytochrome B561; KEGG: mgm:Mmc1_0316 cytochrome b561.
       0.436
Slit_1322
Hypothetical protein; KEGG: sit:TM1040_3285 outer membrane autotransporter barrel.
       0.436
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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