STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1337KEGG: abo:ABO_0065 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Slit_1336
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); KEGG: glo:Glov_3726 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
     0.706
Slit_1335
PFAM: protein of unknown function DUF347; KEGG: dar:Daro_2299 hypothetical protein.
       0.537
Slit_1446
KEGG: lch:Lcho_1540 hypothetical protein.
  
     0.499
Slit_0869
KEGG: mca:MCA2189 cytochrome c family protein.
  
     0.419
Slit_1447
KEGG: lch:Lcho_1541 cytochrome c family protein.
  
     0.411
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.