Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slit_1369PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Slit_1368
PFAM: glycosyl transferase family 39; KEGG: app:CAP2UW1_3298 glycosyl transferase family 39.
 
  
 0.957
Slit_1375
PFAM: polysaccharide deacetylase; KEGG: app:CAP2UW1_3292 hypothetical protein.
 
  
 0.922
Slit_1370
Glutamine--scyllo-inositol transaminase; KEGG: pfs:PFLU5872 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.881
Slit_1374
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bgl:bglu_1g14070 NAD-dependent epimerase/dehydratase.
 
  
 0.786
Slit_1372
PFAM: glycosyl transferase family 2; KEGG: cvi:CV_0749 dolichyl-phosphate b-D-mannosyltransferase.
 
  
 0.774
Slit_1373
PFAM: formyl transferase domain protein; KEGG: app:CAP2UW1_3294 formyl transferase domain protein.
 
  
 0.737
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.634
Slit_2875
PFAM: O-antigen polymerase; KEGG: rso:RSc2204 hypothetical protein.
  
     0.560
Slit_0342
PFAM: glycosyl transferase family 39; KEGG: dfe:Dfer_1293 glycosyl transferase family 39.
 
  
 0.506
Slit_2644
Spermidine synthase-like protein; KEGG: bbt:BBta_1296 putative spermine/spermidine synthase family protein.
  
    0.474
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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