Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slit_1373PFAM: formyl transferase domain protein; KEGG: app:CAP2UW1_3294 formyl transferase domain protein. (307 aa)    
Predicted Functional Partners:
Slit_1374
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bgl:bglu_1g14070 NAD-dependent epimerase/dehydratase.
     0.993
Slit_1372
PFAM: glycosyl transferase family 2; KEGG: cvi:CV_0749 dolichyl-phosphate b-D-mannosyltransferase.
  
 0.968
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.935
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 
0.918
Slit_1375
PFAM: polysaccharide deacetylase; KEGG: app:CAP2UW1_3292 hypothetical protein.
 
  
 0.908
Slit_1368
PFAM: glycosyl transferase family 39; KEGG: app:CAP2UW1_3298 glycosyl transferase family 39.
 
  
 0.802
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.753
Slit_1369
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein.
 
  
 0.737
Slit_0010
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.693
Slit_0939
PFAM: Fmu (Sun) domain protein; KEGG: neu:NE0085 SAM (and some other nucleotide) binding motif; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.686
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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