STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1374PFAM: NAD-dependent epimerase/dehydratase; KEGG: bgl:bglu_1g14070 NAD-dependent epimerase/dehydratase. (347 aa)    
Predicted Functional Partners:
Slit_1373
PFAM: formyl transferase domain protein; KEGG: app:CAP2UW1_3294 formyl transferase domain protein.
     0.993
Slit_1372
PFAM: glycosyl transferase family 2; KEGG: cvi:CV_0749 dolichyl-phosphate b-D-mannosyltransferase.
  
 0.988
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
      0.900
Slit_1375
PFAM: polysaccharide deacetylase; KEGG: app:CAP2UW1_3292 hypothetical protein.
 
  
 0.900
Slit_1368
PFAM: glycosyl transferase family 39; KEGG: app:CAP2UW1_3298 glycosyl transferase family 39.
 
  
 0.794
Slit_1369
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcm:Bcenmc03_1882 hypothetical protein.
 
  
 0.786
Slit_1370
Glutamine--scyllo-inositol transaminase; KEGG: pfs:PFLU5872 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
    0.706
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.610
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.564
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.561
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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