STRINGSTRING
Slit_1376 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1376" - Signal transduction protein in Sideroxydans lithotrophicus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1376Signal transduction protein (282 aa)    
Predicted Functional Partners:
Slit_1016
Hypothetical protein (253 aa)
   
          0.709
Slit_2006
Serine/threonine protein kinase (801 aa)
   
          0.704
Slit_1375
Polysaccharide deacetylase (301 aa)
              0.686
Slit_2680
Hypothetical protein (194 aa)
   
          0.652
Slit_0444
ATP-binding region ATPase domain protein (558 aa)
   
          0.636
Slit_2597
Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (318 aa)
   
          0.632
Slit_0679
Hypothetical protein (225 aa)
   
          0.609
Slit_0443
Hypothetical protein (233 aa)
   
          0.609
Slit_2601
Hypothetical protein (292 aa)
   
          0.584
Slit_0613
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3’-5’) cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility (255 aa)
   
          0.584
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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