STRINGSTRING
Slit_1433 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1433" - Transmembrane protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1433Transmembrane protein (277 aa)    
Predicted Functional Partners:
Slit_1434
MltA-interacting MipA family protein (259 aa)
              0.859
Slit_1432
Crp/Fnr family transcriptional regulator (165 aa)
              0.627
Slit_0547
Response regulator receiver modulated CheW protein (313 aa)
   
          0.615
Slit_0562
FlgN family protein (157 aa)
   
          0.597
Slit_0619
Flagellar protein FlaG protein (123 aa)
   
          0.573
Slit_0613
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3’-5’) cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility (255 aa)
   
          0.570
Slit_2837
Hypothetical protein (258 aa)
   
          0.550
Slit_2821
VanZ family protein (361 aa)
   
          0.546
Slit_0548
Response regulator receiver modulated CheW protein (315 aa)
   
          0.546
Slit_1431
Hypothetical protein (89 aa)
              0.486
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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