STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1445SMART: metal-dependent phosphohydrolase HD region; KEGG: dal:Dalk_0216 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Slit_1444
PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A1849 hypothetical protein.
       0.586
Slit_0535
Putative transcriptional regulator, Crp/Fnr family; KEGG: mmb:Mmol_0609 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; Rhodanese domain protein; SMART: cyclic nucleotide-binding; Rhodanese domain protein.
  
     0.481
Slit_1446
KEGG: lch:Lcho_1540 hypothetical protein.
       0.449
Slit_1447
KEGG: lch:Lcho_1541 cytochrome c family protein.
       0.449
dapD
KEGG: tbd:Tbd_1220 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.441
Slit_1443
KEGG: nmu:Nmul_A1850 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II.
       0.441
Slit_2007
KEGG: rfr:Rfer_3669 nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.433
Slit_0252
Adenylate/guanylate cyclase with Chase sensor; KEGG: sat:SYN_01481 adenylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
 
     0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.