Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Slit_1446KEGG: lch:Lcho_1540 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Slit_1447
KEGG: lch:Lcho_1541 cytochrome c family protein.
 
   
 0.975
Slit_1448
Hypothetical protein; KEGG: lch:Lcho_1542 cytochrome c family protein.
 
   
 0.937
Slit_0869
KEGG: mca:MCA2189 cytochrome c family protein.
  
   
 0.898
Slit_0868
KEGG: lch:Lcho_1542 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein.
  
   
 0.897
Slit_0525
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.779
Slit_0866
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.779
Slit_1449
Hypothetical protein; Manually curated; KEGG: lch:Lcho_1543 sporulation domain-containing protein.
     
 0.741
Slit_0867
KEGG: lch:Lcho_1543 sporulation domain-containing protein.
      
 0.567
Slit_1337
KEGG: abo:ABO_0065 hypothetical protein.
  
     0.499
Slit_1445
SMART: metal-dependent phosphohydrolase HD region; KEGG: dal:Dalk_0216 hypothetical protein.
       0.449
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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