Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1469TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Ig family protein; KEGG: chu:CHU_1335 endoglucanase-like protein; SMART: Autotransporter beta- domain protein. (1833 aa)    
Predicted Functional Partners:
Slit_1468
KEGG: avi:Avi_5260 hypothetical protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
 
     0.831
Slit_1470
Hypothetical protein; KEGG: hoh:Hoch_3071 PKD domain containing protein.
       0.768
Slit_1384
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dar:Daro_2953 TonB-dependent receptor.
    
 
 0.721
Slit_1471
KEGG: mag:amb4390 hypothetical protein.
       0.641
Slit_2878
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2201 putative signal peptide protein.
  
     0.503
Slit_2874
PFAM: glycosyl transferase family 2; KEGG: rso:RSc2203 hypothetical protein.
  
     0.465
Slit_1467
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; MASE1 domain protein; GGDEF domain containing protein; KEGG: mei:Msip34_1597 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.
       0.425
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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