Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Slit_1549KEGG: bxe:Bxe_A2534 putative HTH-type transcriptional regulator,YgjM-like; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (142 aa)    
Predicted Functional Partners:
Slit_1550
Protein of unknown function DUF2136; KEGG: lbf:LBF_2137 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2136.
 
 
 0.979
Slit_2793
PFAM: Protein of unknown function DUF2136; KEGG: rrs:RoseRS_0380 hypothetical protein.
 
 
 0.914
Slit_1603
PFAM: protein of unknown function DUF497; KEGG: gur:Gura_0788 hypothetical protein.
  
   
 0.615
Slit_1140
KEGG: cyc:PCC7424_5687 prophage CP4-57 regulatory.
  
   
 0.509
Slit_1548
Tex-like protein protein-like protein; KEGG: har:HEAR3018 putative polyribonucleotide nucleotidyltransferase; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold.
       0.419
Slit_0383
PFAM: protein of unknown function DUF497; KEGG: pph:Ppha_2521 hypothetical protein.
  
   
 0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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