STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1561Putative signal transduction protein; KEGG: azo:azo2779 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD. (288 aa)    
Predicted Functional Partners:
Slit_2341
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: maq:Maqu_2268 putative signal transduction protein.
  
     0.775
Slit_1301
KEGG: dar:Daro_0970 response regulator receiver; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region.
  
     0.507
Slit_1202
KEGG: mms:mma_1961 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; Tetratricopeptide repeat.
  
 
   0.474
Slit_0560
PFAM: MotA/TolQ/ExbB proton channel; KEGG: azo:azo1108 flagellar motor protein.
 
     0.468
Slit_2595
KEGG: har:HEAR1941 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV); putative signal peptide.
  
     0.455
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.435
Slit_1302
Histidine kinase; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: ATP-binding region ATPase domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_1978 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
     0.431
Slit_2597
KEGG: har:HEAR1943 putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshI.
  
     0.428
Slit_1562
KEGG: bxe:Bxe_B0541 hypothetical protein.
       0.419
Slit_2601
Conserved hypothetical protein; KEGG: rfr:Rfer_3339 methylation.
  
     0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.