STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1573Band 7 protein; KEGG: cti:RALTA_A1672 putative stomatin_like membrane protein; PFAM: band 7 protein; SMART: band 7 protein. (301 aa)    
Predicted Functional Partners:
Slit_1574
PFAM: protein of unknown function DUF107; KEGG: bbr:BB2624 hypothetical protein.
 
 
 0.930
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.723
Slit_1423
HflC protein; HflC and HflK could regulate a protease.
  
     0.698
Slit_1572
KEGG: mms:mma_3559 hypothetical protein.
       0.568
Slit_1422
HflK protein; HflC and HflK could encode or regulate a protease.
  
   
 0.447
Slit_2367
PFAM: peptidase M16 domain protein; KEGG: mei:Msip34_1921 peptidase M16 domain protein.
  
 0.444
Slit_2368
PFAM: peptidase M16 domain protein; KEGG: nmu:Nmul_A2737 peptidase M16-like; Belongs to the peptidase M16 family.
   
 0.433
Slit_2777
PFAM: protein of unknown function DUF107; KEGG: nmu:Nmul_A1039 hypothetical protein.
  
    0.404
Slit_1575
KEGG: cvi:CV_0283 hypothetical protein.
       0.403
Slit_1026
KEGG: rme:Rmet_2903 hypothetical protein.
  
    0.402
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.